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Selected publications
This page lists selected pre-prints and published works from the group. A more comprehensive list of publications can be found on
Google Scholar
.
2026
APOBEC3G in complex with RNA: bridging high-speed AFM and simulation studies.
Bigger isn’t always better: Comparing system size, hydration, and software for lipid membrane analysis. https://doi.org/10.1016/j.bbamem.2026.184541
Ahead of the membrane curve: in silico insights into amyloid-β aggregation. https://doi.org/10.64898/2026.08.22.746319
Beyond Co-Existence: Early α-Synuclein-Amyloid-β42 Association from Molecular Dynamics Simulations. https://doi.org/10.64898/2026.01.29.702600
2025
Uncovering amyloid-beta interactions: gray versus white matter. https://doi.org/10.1021/acschemneuro.4c00439
Molecular Dynamics Simulation Dataset: POPC Bilayers at Varying Sizes (128, 256, 512 and 1024 lipids) and Hydrations (40, 80 and 160 water/lipid) Analyzed with CPPTRAJ, GROMACS, MDAnalysis, and LiPyphilic. https://doi.org/10.5281/zenodo.17867492
2024
Nanoscale Interaction of Endonuclease APE1 with DNA. https://doi.org/10.3390/ijms25105145
2023
Assembly of Synaptic Protein–DNA Complexes: Critical Role of Non-Specific Interactions. https://doi.org/10.3390/ijms24129800
2022
Beyond Sequence: Internucleosomal Interactions Dominate Array Assembly. https://doi.org/10.1021/acs.jpcb.2c05321
Nanorings to Probe Mechanical Stress of Single-Stranded DNA Mediated by the DNA Duplex. https://doi.org/10.3390/ijms232112916
Free Cholesterol Accelerates Aβ Self-Assembly on Membranes at Physiological Concentration. https://doi.org/10.3390/ijms23052803
Hybrid resolution molecular dynamics simulations of amyloid proteins interacting with membranes. https://doi.org/10.1016/j.ymeth.2021.03.005
2021
Site-Search Process for Synaptic Protein-DNA Complexes. https://doi.org/10.3390/ijms23010212
Restriction of RecG translocation by DNA mispairing. https://doi.org/10.1016/j.bbagen.2021.130006
DNA Looping Mediated by Site-Specific SfiI–DNA Interactions. https://doi.org/10.1021/acs.jpcb.1c00763
Cholesterol in Membranes Facilitates Aggregation of Amyloid β Protein at Physiologically Relevant Concentrations. https://doi.org/10.1021/acschemneuro.0c00688
2020 and earlier
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