This page lists selected pre-prints and published works from the group. A more comprehensive list of publications can be found on Google Scholar.
2024
Nanoscale interaction of endonuclease APE-1 with DNA characterized by atomic force microscopy
S Vemulapalli, M Hashemi, Y Chen, S Pramanik, KK Bhakat, YL Lyubchenko
bioRxiv, 2024.02. 11.579811. Full text
2023
Assembly of Synaptic Protein–DNA Complexes: Critical Role of Non-Specific Interactions.
S Vemulapalli, M Hashemi, AB Kolomeisky, YL Lyubchenko
International Journal of Molecular Sciences 24 (12), 9800. Full text
2022
Beyond Sequence: Internucleosomal Interactions Dominate Array Assembly.
Y Wang, T Stormberg, M Hashemi, AB Kolomeisky, YL Lyubchenko
The Journal of Physical Chemistry B 126 (51), 10813-10821. Full text
Nanorings to Probe Mechanical Stress of Single-Stranded DNA Mediated by the DNA Duplex
K Zagorski, T Stormberg, M Hashemi, AB Kolomeisky, YL Lyubchenko
International Journal of Molecular Sciences 23 (21), 12916. Full text
Free Cholesterol Accelerates Aβ Self-Assembly on Membranes at Physiological Concentration
M Hashemi*, S Banerjee*, YL Lyubchenko
International journal of molecular sciences 23 (5), 2803. Full text
Hybrid resolution molecular dynamics simulations of amyloid proteins interacting with membranes
M Hashemi, YL Lyubchenko
Methods 197, 89-96. Full text
2021
Site-Search Process for Synaptic Protein-DNA Complexes
S Vemulapalli, M Hashemi, YL Lyubchenko
International journal of molecular sciences 23 (1), 212. Full text
Restriction of RecG translocation by DNA mispairing
Z Sun, Y Wang, M Hashemi, YL Lyubchenko
Biochimica et Biophysica Acta (BBA)-General Subjects 1865 (12), 130006. Full text
DNA Looping Mediated by Site-Specific SfiI–DNA Interactions
S Vemulapalli, M Hashemi, AB Kolomeisky, YL Lyubchenko
The Journal of Physical Chemistry B 125 (18), 4645-4653. Full text
Cholesterol in Membranes Facilitates Aggregation of Amyloid β Protein at Physiologically Relevant Concentrations
S Banerjee*, M Hashemi*, K Zagorski, YL Lyubchenko
ACS Chemical Neuroscience 12 (3), 506-516. Full text
2020 and earlier
Interaction of Aβ42 with Membranes Triggers the Self-Assembly into Oligomers
S Banerjee*, M Hashemi*, K Zagorski, YL Lyubchenko
International Journal of Molecular Sciences 21 (3), 1129. Full text
Assembly of α-synuclein aggregates on phospholipid bilayers
Z Lv*, M Hashemi*, S Banerjee, K Zagorski, JC Rochet, YL Lyubchenko
Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics 1867 (9), 802-812. Full text
Spontaneous self-assembly of amyloid β (1–40) into dimers
M Hashemi, Y Zhang, Z Lv, YL Lyubchenko
Nanoscale Advances 1 (10), 3892-3899. Full text
Dynamics of the Interaction of RecG Protein with Stalled Replication Forks
Z Sun, M Hashemi, G Warren, PR Bianco, YL Lyubchenko
Biochemistry 57 (13), 1967-1976. Full text
High-speed atomic force microscopy reveals structural dynamics of α-synuclein monomers and dimers
Y Zhang, M Hashemi, Z Lv, B Williams, KI Popov, NV Dokholyan, YL Lyubchenko
The Journal of Chemical Physics 148 (12), 123322. Full text
Nanoscale dynamics of centromere nucleosomes and the critical roles of CENP-A
MP Stumme-Diers, S Banerjee, M Hashemi, Z Sun, YL Lyubchenko
Nucleic Acids Research 46 (1), 94-103. Full text
Nano-assembly of amyloid f peptide: role of the hairpin fold
S Maity, M Hashemi, YL Lyubchenko
Scientific Reports 7, 2344. Full text
A novel pathway for amyloids self-assembly in aggregates at nanomolar concentration mediated by the interaction with surfaces
S Banerjee*, M Hashemi*, Z Lv, S Maity, JC Rochet, YL Lyubchenko
Scientific Reports 7, 45592. Full text
Self-assembly of the full-length amyloid Aβ42 protein in dimers
Y Zhang, M Hashemi, Z Lv, YL Lyubchenko
Nanoscale 8 (45), 18928-18937. Full text
Aligned deposition and electrical measurements on single DNA molecules
G Eidelshtein, A Kotlyar, M Hashemi, L Gurevich
Nanotechnology 26 (47), 475102. Full text
Role of monomer arrangement in the amyloid self-assembly
A Portillo, M Hashemi, Y Zhang, L Breydo, VN Uversky, YL Lyubchenko
Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics 1854 (3), 218-228. Full text
The Many Faces of Diphenylalanine
M Hashemi, P Fojan, L Gurevich
Journal of Self-assembly and Molecular Electronics (same) 1 (2), 195-208. Full text